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Challenges in array CGH for the analysis of cancer samples
Genetics in Medicine. 9(9):585-595, 2007
Chromosome 11 genomic changes in parathyroid adenoma and hyperplasia: Array CGH, FISH and tissue microarrays
Genes Chromosomes Cancer. 47(8): 639-648, 2008
Array comparative genomic hybridization analysis of primary endometrial and ovarian high-grade neuroendocrine carcinoma associated with adenocarcinoma: mystery resolved?
International Journal of Gynecological Pathology. 4:539-546, 2008
A comparative analysis of two tissue procurement approaches for the genomic profiling of clinical colorectal cancer samples
International Journal of Colorectal Disease. Published online 2008 Jul 16
The use of Array-Comparative Genomic Hybridization (a-CGH) to distinguish metastatic from primary synchronous carcinomas of the ovary and the uterus
Histopathology. 2008 Jul 16
A Role for Gab2 in Melanoma Metastasis
American Journal of Pathology. 2009 Apr; 174(4):1524-33
Uniparentalism in sporadic colorectal cancer is independent of imprint status, and coordinate for chromosomes 14 and 18
Cancer Genetics and Cytogenetics. 2009 Mar; 189(2):77-86
Translocation (4; 11) (p12; q23) with rearrangement of FRYL and MLL in therapy-related acute myeloid leukemia
Cancer Genetics Cytogenetics. 177(2):143-146, 2007.
aCGH local number aberrations associated with overall copy number genomic instability in colorectal cancer: coordinate involvement of the regions inclcuding BCR and ABL
Mutation Research. 615(1-2): 1-11, 2007
Comparative genomic instabilities of thyroid and colon cancers
Stoler, D.L., Nowak, N.J., Matsui, S-I., Wiseman, S.M., Chen, N., Dutt, S., Bartos, J.D., Loree, T.R., Rigual, N.R., Hicks, W.L., Sait, S.N., Anderson, G.R.. Arch Otolaryngol Head Neck Surg 133(5):457-463, 2007
Epigenetic silencing of CYP24 in tumor-derived endothelial cells contributes to selective growth inhibition by calcitriol
Chung, I., Karpf, A.R., Muindi, J.R., Conroy, J.M., Nowak, N.J., Johnson, C.S., Trump, D.L J Biol Chem. 282(12):8704-8714, 2007
Loss of BRMS1 protein expression predicts reduced disease-free survival in hormone receptor negative and HER2 positive subsets of breast cancer
Hicks, D.G., Yoder, B.J., Short, S., Tarr, S., Prescott, N., Crowe, J.P., Dawson1, A.E., Budd, G.T., Sizemore, S., Cicek, M., Choueiri3, T., Tubbs, R.R., Gaile, D., Nowak, N., Accavitti-Loper, M.A., Frost, A.R., Welch6, D. R., and Casey, G. . Clin Cancer Res 12:(22):6702-6708, 2006
Genomic profiles of colorectal cancers differ based on patient smoking status
Swede, H., Bartos, J. , Chen, N., Shaukat, A., Dutt, S., McQuaid, D., Natarajan, N. , Rodriguez-Bigas, M., Nowak, N., Wiseman, S., Alrawi, S., Brenner, B., Petrelli, N., Cummings, K.M., Stoler, D.L., Anderson, G.R.
Cancer Genet Cytogenet168(2):98-104, 2006
20q11.1 amplification in giant-cell tumor of bone: Array CGH, FISH, and association with outcome
Smith, L.T., Mayerson, J., Nowak, N.J., Suster, D., Mohammed, N., Long, S., Auer, H., Jones, S., McKeegan, C., Young, G., Bos, G., Plass, C., Morrison, C. Genes Chromosomes Cancer ;45(10):957-966, 2006
Genomic instability of human aberrant crypt foci measured by inter-(simple sequence repeat) pcr and array-cgh
Alrawi, S.J., Carroll, R.E., Hill, H.C., Gibbs, J.F., Tan, D., Brenner, B.M., Nowak, N.J., Swede, H., Stoler. D.L., Anderson, G.R. Mutat Res 10;601(1-2):30-38, 2006
Array CGH analysis of pediatric medulloblastomas
Rossi, M.R., Conroy, J., McQuaid, D., Nowak, N.J., Rutka, J.T., Cowell, J.K.Genes Chromosomes Cancer 45(3):290-303, 2006
Microarray data mining for potential selenium targets in chemoprevention of prostate cancer
Zhang, H., Dong, Y., Zhao, H., Brooks, J.D., Hawthorn, L., Nowak, N., Marshall, J.R., Gao, A.C., Ip. C. Cancer Genomics Proteomic. 2:97-114, 2005
Molecular characterization of a consistent 4.5 megabase deletion in 4q28 in prostate cancer cells
Matsui, S.I., LaDuca, J., Rossi, M.R., Nowak, N.J., Cowell, J.K Cancer Genet Cytogenet 159:18-26, 2005
Characterization of the 1p/19q chromosomal loss in oligodendrogliomas using CGHa
Cowell, J.K., Barnett, G., Nowak, N.J.J Neuropathol Exper Neurol 63:2:151-158, 2004
Application of bacterial artificial chromosome array-based comparative genomic hybridization and spectral karotyping to the analysis of glioblastoma multiforme
Cowell, J.K., Matsui, S.I., Wang Y.D., LaDuca, J., Conroy, J., McQuaid, D., Nowak, N.J. Cancer Genet Cytogenet 151:1:36-51, 2004
Identification of differentially expressed genes in clinically distinct groups of serous ovarian carcinomas using cDNA microarray
Collins, Y., Tan, D.F., Pejovic, T., Mor, G., Qian, F., Rutherford, T., Varma, R., McQuaid D., Driscoll, D., Jiang, M., Deeb, G., Lele, S., Nowak, N., Odunsi, K. Int J Mol Med 14:1:43-53, 2004
Molecular characterization of a consistent 4.5 megabase deletion in 4q28 in prostate cancer cells
Matsui, S.I., LaDuca, J., Rossi, M.R., Nowak, N.J., Cowell, J.K. Cancer Genet Cytogenet 159:18-26, 2005
Molecular characterization of the t(3;9) translocation associated with immortalization in the MCF10A cell line
Cowell, J.K., LaDuca, J., Rossi, M.R., Burkhardt, T., Nowak, N.J., Matsui, S-I. Cancer Genet Cytogenet 163:223-29, 2005
Two functional coding single nucleotide polymorphisms in STK15 (Aurora-A) coordinately increase esophageal cancer risk
Kimura, M.T., Mori, T., Conroy, J., Nowak, N.J., Satomi, S., Katsuyuki, T., Nagase, H. Cancer Res 65:3548-3554, 2005
In vitro and in vivo irinotecan-induced changes in expression profiles of cell cycle and apoptosis-associated genes in acute myeloid leukemia cells
Minderman, H., Conroy, J., O’Loughlin, K.L., McQuaid, D., Quinn, P., Li, S., Pendyala L., Nowak, N., Baer, M.R. . Mol Cancer Ther 4:885-900, 2005
Cowell, J,K.
Identification of consistent novel megabase deletions in low-grade oligodendrogliomas using array-based comparative genomic hybridization
Rossi, M.R., Gaile, D., LaDuca, J., Matsui, S.I., Conroy, J., McQuaid, D., Chervinsky, D., Eddy, R., Chen, H-S., Barnett, G., Nowak, N.J., Genes Chromosomes Cancer, 44:85-96, 2005
Genome wide aberrations in pancreatic adenocarcinoma
Nowak, N.J., Gaile, D., Conroy, J.M., McQuaid, D., Cowell, J., Carter, R., Goggins, M.G., Hruban, R.H., Maitra, Cancer Genet Cytogene 161:36-50, 2005
Array comparative genomic hybridisation (aCGH) analysis of premenopausal breast cancers from a nuclear fallout area and matched cases from Western New York
Varma, G., Varma, R., Huang, H., Pryshchepava, A., Groth, J., Fleming, D., Nowak, N.J., McQuaid, D., Conroy, J., Mahoney, M., Moysich, K., Falkner, K.L., Geradts, J. . Br J Cancer 93(6):699-708, 2005
Novel amplicons on the short arm of chromosome 7 identified using high resolution array CGH contain over expressed genes in addition to EGFR in glioblastoma multiforme.
Rossi, M.R., La Duca, J., Matsui, S., Nowak, N,J,, Hawthorn, L., Cowell, J.K. Genes Chromosomes Cancer 44(4):392-404, 2005.
Genomic profiling of myeloid sarcoma by array comparative genomic hybridization
Deeb, G., Baer, M.R., Gaile, D.P., Sait, S.N., Barcos, M., Wetzler, M., Conroy, J.M., Nowak, N.J., Cowell, J.K., Cheney, R.T. . Genes Chromosomes Cancer 44(4):373-383, 2005
Manipulation of nonsense mediated decay identifies gene mutations in colon cancer cells with microsatellite instability
Ionov, Y., Nowak, N., Perucho, M., Markowitz, S., Cowell, J.K. . Oncogene 23:639-645, 2004
Molecular analysis of region t(5;6) (q21;q21 in Wilms tumor
Bruce, C.K., Howard P., Nowak, N.J., Hoban, P.R. . Cancer Genet Cytogenet 141(2):106-113, 2003
Genome-wide array CGH analysis of murine neuroblastoma reveals distinct genomic aberrations which parallel those in human tumors
Hackett, C., Hodgson, G., Law, M., Fridlyand, J., Osoegawa, K., De Jong, P., Nowak, N.J., Pinkel, D., Albertson, D., Jain, A., Jenkins, R, Gray, J., Weiss, W. Cancer Res 63:5266-5273, 2003
The pericentromeric region of human chromosome 11: evidence for a chromosome specific duplication.
Zhang, J., Qin, S., Sait, S.N.J., Haey, L.L., Henry, W.M., Gerhard, D.S., Higgins, M.J., Nowak, N.J., Shows, T.B. Cytogenet Cell Genet 94:137-141, 2001
Double minute chromosomes in acute myeloid leukemia and myelodysplastic syndrome: Identification of new amplification regions by fluorescence in situ hybridization and spectral karotyping.
Sait, S., Qadir, M., Conroy, J., Matsui, S., Nowak, N. J., Baer, M. Genes Chromosomes Cancer 34:1:42-47, 2002
Intrachromosomal genomic instability in human sporadic colorectal cancer measured by genome-wide allelotyping and inter(simple sequence repeat) PCR
Anderson, G., Brenner, B.M., Swede, H., Henry, W.M., Conroy, J.M., Karpenko, M.J., Issa, J.P., Bartos, J., Brunelle, J.K., Chen, N., Jahreis, G.P., Kahlenberg, M.S., Basik, M., Sait, S., Rodriguez-Bigas, M.A., Nowak, N.J., Petrelli, N.J., Shows, T.B., Stoler, D.L.. Cancer Res 61:8274-8283, 2001
Genome scanning with array CGH delineates regional alterations in murine islet carcinomas
Hodgson, G., Hager, J.H., Volik, S., Hariono, S., Wernick, M., Moore, D., Nowak, N., Albertson, A.G., Pinkel, D., Collins, C., Hanahan, D., Gray, J.W. Nat Genet 29: 459-464, 2001 |
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